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I had the AEM cold air intake, Indy Intake manifold and MPX 60mm TB along with the Crane cam 12, AFX race pcm and more. It was a nice combo. I wouldn't be able to tell you how much of a difference the Indy made by itself b/c I had it installed with the Crane cam 12.
I didn't have to match up the TB with the Indy b/c they don't connect right together. On the 2nd gens, the TB is close to a foot away from the Indy itself. U can check my photo gallery.
i think the indy manifold would have gains in the upper rpm range... so im thinking u need a pretty well modified car to really notice the gains with it installed.. as for the throttle body you'd notice a decent increase with it if your just running a stock tb
i have an indy manifold.... but for some reason i have not started the car with it on..... oops, the car will not be started for about a year now.....[:@]