Mud Flaps
#11
Only the molded flaps that contour to the sides of the fenders potentially will rub the paint. Happens on all the brands with that type of flap. On my buddies Ford, they rubbed his paint off but it rubbed on the plastic flare so no issue. Adding some type of clear protective tape is just a preventative idea. It's up to you and depends on where you live as to whether you need protection or not. They use tons of salt around here in the winter so you don't want bare metal.
#12
They do a decent job
http://www.oldjeep.com/images/RoadWork/P6070007.JPG
http://www.oldjeep.com/images/RoadWork/P6070007.JPG